Variant report

Variant	rs13413975
Chromosome Location	chr2:205538572-205538573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205528626..205531544-chr2:205538166..205540869,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10168631	1.00[AMR][1000 genomes]
rs10179131	1.00[AMR][1000 genomes]
rs10180863	1.00[AMR][1000 genomes]
rs10184096	1.00[AMR][1000 genomes]
rs10199785	1.00[AMR][1000 genomes]
rs10199977	1.00[AMR][1000 genomes]
rs10207338	1.00[AMR][1000 genomes]
rs12328281	1.00[AMR][1000 genomes]
rs13387065	1.00[AMR][1000 genomes]
rs13393921	1.00[AMR][1000 genomes]
rs13396823	1.00[AMR][1000 genomes]
rs13409407	1.00[AMR][1000 genomes]
rs13410864	1.00[AMR][1000 genomes]
rs13412778	1.00[AMR][1000 genomes]
rs13417497	1.00[AMR][1000 genomes]
rs13432594	1.00[AMR][1000 genomes]
rs28538804	1.00[AMR][1000 genomes]
rs28751884	1.00[AMR][1000 genomes]
rs59875139	1.00[EUR][1000 genomes]
rs60899945	1.00[AMR][1000 genomes]
rs6718622	1.00[AMR][1000 genomes]
rs6755557	1.00[AMR][1000 genomes]
rs73059097	1.00[AMR][1000 genomes]
rs9653255	1.00[AMR][1000 genomes]
rs9973966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205520800-205542800	Weak transcription	Psoas Muscle	Psoas
2	chr2:205521000-205546200	Weak transcription	Aorta	Aorta
3	chr2:205528000-205546200	Weak transcription	Pancreas	Pancrea
4	chr2:205531200-205545200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:205531600-205539000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:205532200-205539800	Enhancers	HUVEC	blood vessel
7	chr2:205534800-205538800	Weak transcription	NHLF	lung
8	chr2:205535200-205545200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:205535400-205542200	Weak transcription	HSMMtube	muscle
10	chr2:205535400-205545600	Weak transcription	Fetal Lung	lung
11	chr2:205537400-205539800	Genic enhancers	HSMM	muscle
12	chr2:205537800-205539200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:205538000-205538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:205538000-205538800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:205538000-205538800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:205538000-205539200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:205538000-205539200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr2:205538000-205539400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:205538000-205539400	Enhancers	NHEK	skin
20	chr2:205538000-205539600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:205538200-205539000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr2:205538200-205539200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:205538200-205539200	Enhancers	NHDF-Ad	bronchial
24	chr2:205538200-205539400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:205538200-205539400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:205538200-205539400	Enhancers	NH-A	brain
27	chr2:205538200-205539400	Enhancers	Osteobl	bone
28	chr2:205538400-205538600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:205538400-205538800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr2:205538400-205538800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:205538400-205539200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr2:205538400-205539200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:205538400-205539200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:205538400-205539600	Enhancers	HUES64 Cell Line	embryonic stem cell

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