Variant report

Variant	rs13414637
Chromosome Location	chr2:30666194-30666195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10153933	0.85[AMR][1000 genomes]
rs10180872	0.88[AMR][1000 genomes]
rs10195537	0.82[AMR][1000 genomes]
rs10201957	0.85[AMR][1000 genomes]
rs10203381	0.89[AMR][1000 genomes]
rs10207070	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207451	0.82[AMR][1000 genomes]
rs10208152	0.84[AMR][1000 genomes]
rs10211063	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12185696	0.81[AMR][1000 genomes]
rs13429099	0.88[AMR][1000 genomes]
rs13430761	0.88[AMR][1000 genomes]
rs17323641	0.82[AMR][1000 genomes]
rs17394450	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885931	0.85[AMR][1000 genomes]
rs62139585	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62139626	0.86[AMR][1000 genomes]
rs722019	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30661600-30669400	Weak transcription	Primary B cells from cord blood	blood
2	chr2:30663000-30669400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:30663200-30669400	Weak transcription	Thymus	Thymus
4	chr2:30663200-30669600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:30663600-30669000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:30663600-30669000	Weak transcription	Fetal Heart	heart
7	chr2:30663600-30669400	Weak transcription	Primary T cells from cord blood	blood
8	chr2:30663800-30669400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:30664200-30666400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:30665400-30666800	Enhancers	K562	blood
11	chr2:30665800-30666200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:30666000-30667600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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