Variant report

Variant	rs13414886
Chromosome Location	chr2:10446247-10446248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10444518..10446784-chr2:10468775..10471116,3	K562	blood:
2	chr2:10422162..10423929-chr2:10444657..10446996,2	K562	blood:
3	chr2:10292318..10295172-chr2:10445381..10448141,2	K562	blood:
4	chr2:10443091..10446142-chr2:10446208..10448908,3	K562	blood:
5	chr2:10446186..10448257-chr2:10461638..10464096,2	K562	blood:
6	chr2:10446052..10448528-chr2:10452952..10455028,2	MCF-7	breast:
7	chr2:10445053..10449309-chr2:10587064..10589564,3	K562	blood:
8	chr2:10434745..10440361-chr2:10440769..10446494,13	MCF-7	breast:
9	chr2:10444868..10446437-chr2:10448436..10450157,2	MCF-7	breast:
10	chr2:10445047..10447239-chr2:10547484..10549906,2	MCF-7	breast:
11	chr2:10444615..10447130-chr2:10577332..10580177,3	K562	blood:
12	chr2:10440747..10444500-chr2:10444792..10449772,7	MCF-7	breast:
13	chr2:10445536..10447284-chr2:10469328..10472288,2	MCF-7	breast:
14	chr2:10445610..10447546-chr2:10451683..10455005,3	MCF-7	breast:
15	chr2:10284792..10287057-chr2:10444307..10446479,2	K562	blood:
16	chr2:10376539..10378609-chr2:10444548..10446781,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000206898	Chromatin interaction
ENSG00000115758	Chromatin interaction
ENSG00000257135	Chromatin interaction
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10198655	0.86[ASN][1000 genomes]
rs73161222	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73161225	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10444200-10446800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr2:10444600-10446400	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr2:10444600-10446600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr2:10444800-10447800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:10445000-10446400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:10445000-10446400	Enhancers	Gastric	stomach
7	chr2:10445000-10446600	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr2:10445000-10446800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:10445000-10447400	Enhancers	K562	blood
10	chr2:10445000-10447800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:10445000-10447800	Enhancers	Brain Substantia Nigra	brain
12	chr2:10445000-10448200	Enhancers	Primary B cells from peripheral blood	blood
13	chr2:10445000-10448400	Enhancers	Stomach Mucosa	stomach
14	chr2:10445000-10448600	Enhancers	Small Intestine	intestine
15	chr2:10445000-10448800	Enhancers	Pancreas	Pancrea
16	chr2:10445000-10449200	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:10445000-10450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr2:10445200-10446400	Enhancers	Colonic Mucosa	Colon
19	chr2:10445200-10446600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr2:10445200-10447200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:10445200-10447400	Weak transcription	Ovary	ovary
22	chr2:10445200-10448200	Enhancers	Fetal Thymus	thymus
23	chr2:10445200-10448400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:10445200-10448400	Enhancers	Liver	Liver
25	chr2:10445200-10448800	Enhancers	Lung	lung
26	chr2:10445200-10452000	Weak transcription	HMEC	breast
27	chr2:10445200-10452000	Weak transcription	NHLF	lung
28	chr2:10445400-10446400	Enhancers	Brain Anterior Caudate	brain
29	chr2:10445400-10446600	Genic enhancers	HepG2	liver
30	chr2:10445400-10447800	Enhancers	Primary hematopoietic stem cells	blood
31	chr2:10445400-10448000	Enhancers	A549	lung
32	chr2:10445400-10448400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr2:10445400-10450400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr2:10445400-10452200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:10445600-10446400	Enhancers	NHEK	skin
36	chr2:10445600-10446600	Enhancers	Fetal Brain Female	brain
37	chr2:10445600-10447200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:10445600-10447200	Enhancers	Thymus	Thymus
39	chr2:10445600-10452600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:10445800-10446400	Enhancers	Left Ventricle	heart
41	chr2:10445800-10446400	Bivalent Enhancer	Dnd41	blood
42	chr2:10445800-10447400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:10445800-10447400	Weak transcription	Brain Hippocampus Middle	brain
44	chr2:10445800-10447400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:10445800-10447400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:10445800-10447800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:10445800-10448200	Enhancers	Fetal Intestine Large	intestine
48	chr2:10445800-10448200	Enhancers	Fetal Lung	lung
49	chr2:10445800-10449600	Weak transcription	Psoas Muscle	Psoas
50	chr2:10445800-10452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links