Variant report

Variant	rs13415312
Chromosome Location	chr2:141678326-141678327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10084267	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs10084343	0.85[YRI][hapmap]
rs10182172	0.85[YRI][hapmap]
rs13400144	0.85[YRI][hapmap]
rs13400335	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13402852	1.00[YRI][hapmap]
rs13414774	0.82[AFR][1000 genomes]
rs13419308	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs17517841	1.00[CEU][hapmap]
rs17576955	1.00[CEU][hapmap]
rs28702868	0.82[AFR][1000 genomes]
rs72988160	0.88[EUR][1000 genomes]
rs72988161	0.88[EUR][1000 genomes]
rs73964724	0.82[AFR][1000 genomes]
rs9808519	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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