Variant report

Variant	rs1341634
Chromosome Location	chr13:51219345-51219346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1341634	LRCH1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51210800-51223800	Weak transcription	Fetal Thymus	thymus
2	chr13:51218200-51220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:51218200-51220400	Enhancers	HMEC	breast
4	chr13:51218400-51220400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:51218400-51220600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:51218400-51220600	Enhancers	NHEK	skin
7	chr13:51218600-51220600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:51218600-51220600	Enhancers	Osteobl	bone
9	chr13:51218800-51219800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:51218800-51219800	Enhancers	Placenta	Placenta
11	chr13:51218800-51220200	Enhancers	HSMM	muscle
12	chr13:51218800-51220600	Enhancers	NH-A	brain
13	chr13:51218800-51220600	Enhancers	NHDF-Ad	bronchial
14	chr13:51219200-51220200	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links