Variant report

Variant	rs13419406
Chromosome Location	chr2:141651599-141651600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12463802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12467730	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13407252	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13416050	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2016582	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141648800-141654800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141649000-141653200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:141649200-141661800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:141649800-141651600	Enhancers	Dnd41	blood
5	chr2:141649800-141652000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:141649800-141652000	Enhancers	HMEC	breast
7	chr2:141650000-141651600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:141650200-141651600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:141650200-141654200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:141650600-141651600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:141650600-141651600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:141650600-141652200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:141650600-141652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:141650800-141651600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:141651000-141651600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:141651000-141651800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:141651000-141653000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:141651000-141653400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:141651200-141651800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links