Variant report

Variant	rs13419755
Chromosome Location	chr2:178945808-178945809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178935372..178939354-chr2:178942023..178945915,4	K562	blood:
2	chr2:178940677..178943272-chr2:178945277..178948244,4	K562	blood:

Variant related genes	Relation type
ENSG00000128655	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10189134	1.00[CHD][hapmap]
rs10497477	1.00[CHD][hapmap]
rs12989423	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12989778	1.00[ASN][1000 genomes]
rs13033194	1.00[ASN][1000 genomes]
rs13402629	1.00[CHD][hapmap]
rs13410486	1.00[CHD][hapmap]
rs17401902	1.00[CHD][hapmap]
rs334055	1.00[ASN][1000 genomes]
rs334060	1.00[ASN][1000 genomes]
rs334064	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs334065	1.00[ASN][1000 genomes]
rs334071	1.00[ASN][1000 genomes]
rs334076	1.00[ASN][1000 genomes]
rs334077	1.00[ASN][1000 genomes]
rs34069002	1.00[ASN][1000 genomes]
rs34395717	1.00[ASN][1000 genomes]
rs34702539	1.00[ASN][1000 genomes]
rs34927879	1.00[ASN][1000 genomes]
rs35620189	1.00[ASN][1000 genomes]
rs35938761	1.00[ASN][1000 genomes]
rs6737266	1.00[ASN][1000 genomes]
rs71423553	1.00[ASN][1000 genomes]
rs71423554	1.00[ASN][1000 genomes]
rs71423555	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv583739	chr2:178942302-178993562	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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