Variant report

Variant	rs1342036
Chromosome Location	chr1:173302838-173302839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10912600	0.80[ASN][1000 genomes]
rs10912602	0.80[ASN][1000 genomes]
rs11576547	0.90[ASN][1000 genomes]
rs11577537	0.90[ASN][1000 genomes]
rs11577727	0.90[ASN][1000 genomes]
rs11802759	0.80[ASN][1000 genomes]
rs12723393	0.89[ASN][1000 genomes]
rs12736195	0.90[ASN][1000 genomes]
rs12742673	0.90[ASN][1000 genomes]
rs12750865	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1539258	0.90[ASN][1000 genomes]
rs1557121	0.80[ASN][1000 genomes]
rs17346550	0.90[ASN][1000 genomes]
rs17350669	1.00[ASN][1000 genomes]
rs1857066	0.80[ASN][1000 genomes]
rs2027498	0.80[ASN][1000 genomes]
rs2027499	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2105325	0.80[ASN][1000 genomes]
rs2153775	0.80[ASN][1000 genomes]
rs2422349	0.80[ASN][1000 genomes]
rs34746916	0.90[ASN][1000 genomes]
rs34972373	0.90[ASN][1000 genomes]
rs35407548	0.90[ASN][1000 genomes]
rs35538218	0.89[ASN][1000 genomes]
rs4298771	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[ASN][1000 genomes]
rs4382762	0.80[ASN][1000 genomes]
rs4916215	0.90[ASN][1000 genomes]
rs4916340	0.80[ASN][1000 genomes]
rs6681162	0.83[ASN][1000 genomes]
rs6681482	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7528321	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173299200-173310000	Weak transcription	HSMMtube	muscle
2	chr1:173299200-173311200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:173299200-173316600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:173299800-173316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:173300600-173303000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
7	chr1:173301000-173309400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:173301000-173310600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:173301200-173303200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:173301200-173306200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:173301400-173303000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:173301400-173304800	Weak transcription	Small Intestine	intestine
13	chr1:173301400-173321200	Weak transcription	Ovary	ovary
14	chr1:173301600-173304600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:173301600-173306200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:173301600-173311000	Weak transcription	Gastric	stomach
17	chr1:173301800-173310200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:173302200-173303000	Flanking Active TSS	GM12878-XiMat	blood
19	chr1:173302600-173303000	Enhancers	NH-A	brain
20	chr1:173302800-173303000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:173302800-173303000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:173302800-173303000	Enhancers	NHDF-Ad	bronchial

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