Variant report

Variant	rs13424082
Chromosome Location	chr2:180227865-180227866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10187146	0.82[ASN][1000 genomes]
rs10206292	0.82[ASN][1000 genomes]
rs10930866	0.91[ASN][1000 genomes]
rs10930867	0.85[ASN][1000 genomes]
rs12471246	0.85[ASN][1000 genomes]
rs13390979	0.81[ASN][1000 genomes]
rs2367641	0.88[ASN][1000 genomes]
rs2367642	0.85[ASN][1000 genomes]
rs6433782	0.91[ASN][1000 genomes]
rs6731104	0.82[EUR][1000 genomes]
rs72952348	0.82[ASN][1000 genomes]
rs7421358	0.90[ASN][1000 genomes]
rs7596458	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004693	chr2:179933683-180265288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv583866	chr2:180141614-180233627	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13424082	CWC22	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180227200-180228600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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