Variant report

Variant	rs13424165
Chromosome Location	chr2:98993035-98993036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10172229	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13418831	0.86[ASN][1000 genomes]
rs6542732	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6753286	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1010466	chr2:98938886-98998109	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013617	chr2:98943377-99004173	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98983200-98993400	Weak transcription	Fetal Brain Female	brain
2	chr2:98989200-98994400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:98990600-99007200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:98991000-98994600	Weak transcription	Ovary	ovary
5	chr2:98991400-98993400	Enhancers	Fetal Muscle Leg	muscle
6	chr2:98991600-98995200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:98991800-98995400	Weak transcription	Spleen	Spleen
8	chr2:98991800-98996600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:98991800-98997200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:98992400-98996200	Enhancers	HSMMtube	muscle
11	chr2:98992600-98993800	Enhancers	Brain Germinal Matrix	brain
12	chr2:98992600-98994200	Enhancers	Brain Angular Gyrus	brain
13	chr2:98992600-98994400	Enhancers	Fetal Brain Male	brain
14	chr2:98992600-98994600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:98992600-98996000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:98992800-98993200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:98992800-98993600	Enhancers	Brain Anterior Caudate	brain
18	chr2:98992800-98993600	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:98992800-98993600	Enhancers	Fetal Muscle Trunk	muscle
20	chr2:98992800-98994200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:98992800-98994400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:98992800-98996400	Enhancers	HSMM	muscle

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