Variant report

Variant	rs13424207
Chromosome Location	chr2:62711395-62711396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10165283	0.81[AFR][1000 genomes]
rs13417701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6722421	0.86[AFR][1000 genomes]
rs6751123	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv2751	chr2:62691264-62737131	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62703000-62712400	Weak transcription	A549	lung
2	chr2:62703600-62711600	Weak transcription	Liver	Liver
3	chr2:62703600-62724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:62705600-62713200	Weak transcription	Lung	lung
5	chr2:62705800-62711400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:62705800-62711400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:62705800-62711400	Weak transcription	Ovary	ovary
8	chr2:62705800-62712000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:62705800-62712200	Weak transcription	NHDF-Ad	bronchial
10	chr2:62705800-62712800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:62705800-62712800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:62705800-62713000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:62705800-62713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:62705800-62713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:62705800-62732200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:62706400-62711400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:62706600-62726600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:62707000-62711400	Weak transcription	Adipose Nuclei	Adipose
19	chr2:62709800-62711800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:62710600-62711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:62710600-62713000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:62710800-62712000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links