Variant report

Variant	rs1342434
Chromosome Location	chr1:57321690-57321691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1342433	1.00[EUR][1000 genomes]
rs17114511	1.00[EUR][1000 genomes]
rs57858297	1.00[EUR][1000 genomes]
rs6668097	1.00[EUR][1000 genomes]
rs706475	1.00[EUR][1000 genomes]
rs72913434	1.00[EUR][1000 genomes]
rs856842	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv508215	chr1:57319460-57351150	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57316600-57323200	Enhancers	Fetal Intestine Small	intestine
2	chr1:57320200-57324000	Active TSS	Liver	Liver
3	chr1:57320800-57321800	Active TSS	HepG2	liver
4	chr1:57321400-57322000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:57321600-57321800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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