Variant report
| Variant | rs13424853 |
|---|---|
| Chromosome Location | chr2:142066893-142066894 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10184311 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10188773 | 0.87[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs10195359 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1118042 | 0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1521102 | 0.87[CEU][hapmap] |
| rs16845762 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap] |
| rs2049153 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2139149 | 0.87[EUR][1000 genomes] |
| rs300369 | 0.83[CEU][hapmap] |
| rs300406 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs373908 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs384507 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs387846 | 0.87[CEU][hapmap] |
| rs399117 | 1.00[CEU][hapmap] |
| rs416307 | 0.96[EUR][1000 genomes] |
| rs423807 | 0.96[EUR][1000 genomes] |
| rs434276 | 0.95[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs442660 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4954697 | 0.83[CEU][hapmap] |
| rs6712429 | 0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap] |
| rs6719988 | 1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap] |
| rs7560336 | 0.81[CEU][hapmap] |
| rs7560604 | 0.87[EUR][1000 genomes] |
| rs9283437 | 0.91[CEU][hapmap] |
| rs962904 | 0.91[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009434 | chr2:141832339-142156180 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2830111 | chr2:142047759-142164422 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3693337 | chr2:142047759-142164422 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv875230 | chr2:142055133-142119323 | ZNF genes & repeats Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv583203 | chr2:142055133-142378975 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
