Variant report

Variant	rs13425411
Chromosome Location	chr2:179110928-179110929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179110847..179113165-chr2:179114202..179118396,3	K562	blood:
2	chr2:179109388..179113202-chr2:179114202..179117168,4	K562	blood:
3	chr2:179057531..179060332-chr2:179109780..179113064,3	K562	blood:

Variant related genes	Relation type
ENSG00000079156	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13398164	1.00[MEX][hapmap]
rs13402888	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13406261	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13427624	1.00[MEX][hapmap]
rs7603411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9973573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1011423	chr2:179084407-179166160	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179091200-179115000	Weak transcription	Aorta	Aorta
2	chr2:179101000-179115400	Weak transcription	Gastric	stomach
3	chr2:179104200-179111000	Weak transcription	Left Ventricle	heart
4	chr2:179105400-179120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:179106600-179115200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:179106800-179115200	Weak transcription	Pancreas	Pancrea
7	chr2:179107200-179112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:179107200-179115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:179107200-179116000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:179107400-179112000	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:179107400-179112000	Weak transcription	HSMM	muscle
12	chr2:179107400-179112400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:179107400-179115200	Weak transcription	Fetal Lung	lung
14	chr2:179107600-179111000	Weak transcription	Brain Angular Gyrus	brain
15	chr2:179107600-179115000	Weak transcription	Fetal Brain Female	brain
16	chr2:179107600-179115400	Weak transcription	Brain Anterior Caudate	brain
17	chr2:179107800-179123000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:179108000-179111600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:179108200-179112200	Weak transcription	Right Ventricle	heart
20	chr2:179108400-179115000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:179108400-179115800	Weak transcription	Fetal Brain Male	brain
22	chr2:179109200-179111000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:179109400-179115200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:179109600-179111800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr2:179109800-179111200	Enhancers	Psoas Muscle	Psoas
26	chr2:179109800-179112800	Enhancers	Fetal Muscle Leg	muscle
27	chr2:179110200-179112600	Enhancers	HSMMtube	muscle
28	chr2:179110400-179111000	Weak transcription	K562	blood
29	chr2:179110600-179111000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr2:179110600-179111000	Weak transcription	Right Atrium	heart

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