Variant report

Variant	rs13425426
Chromosome Location	chr2:189713569-189713570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10153879	0.86[AFR][1000 genomes]
rs10153942	0.84[AFR][1000 genomes]
rs10178402	0.84[AFR][1000 genomes]
rs10194169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10205357	0.86[AFR][1000 genomes]
rs10931384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13400242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13427060	0.84[AFR][1000 genomes]
rs28460253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644358	0.91[AFR][1000 genomes]
rs28681308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711483	0.80[AFR][1000 genomes]
rs6746601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7589250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808167	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189713200-189713600	Enhancers	HUVEC	blood vessel
2	chr2:189713200-189714000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:189713400-189714000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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