Variant report

Variant	rs13426081
Chromosome Location	chr2:149041012-149041013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10168627	0.89[AFR][1000 genomes]
rs10172107	1.00[AFR][1000 genomes]
rs10172459	1.00[AFR][1000 genomes]
rs10174899	1.00[AFR][1000 genomes]
rs10175126	1.00[AFR][1000 genomes]
rs10179991	1.00[AFR][1000 genomes]
rs10180813	0.89[AFR][1000 genomes]
rs10181040	0.89[AFR][1000 genomes]
rs10181462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186976	1.00[AFR][1000 genomes]
rs10187257	0.93[AFR][1000 genomes]
rs10189852	1.00[AFR][1000 genomes]
rs10191591	0.89[AFR][1000 genomes]
rs10191867	0.89[AFR][1000 genomes]
rs10197288	0.89[AFR][1000 genomes]
rs10199100	1.00[AFR][1000 genomes]
rs10199661	0.89[AFR][1000 genomes]
rs10206286	1.00[AFR][1000 genomes]
rs13385606	0.89[AFR][1000 genomes]
rs13385697	1.00[AFR][1000 genomes]
rs13387197	0.89[AFR][1000 genomes]
rs13397712	1.00[AFR][1000 genomes]
rs13399551	0.89[AFR][1000 genomes]
rs13403934	0.86[AFR][1000 genomes]
rs13417167	0.89[AFR][1000 genomes]
rs13420788	0.93[AFR][1000 genomes]
rs13422826	1.00[AFR][1000 genomes]
rs28405957	0.93[AFR][1000 genomes]
rs28594070	1.00[AFR][1000 genomes]
rs28647742	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869146	chr2:148787051-149060763	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1004431	chr2:148859099-149054114	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1009608	chr2:148897348-149133718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2753542	chr2:149004714-149268503	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1012275	chr2:149031668-149316793	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv523090	chr2:149037012-149110873	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149012600-149043400	Weak transcription	Gastric	stomach
2	chr2:149012800-149096000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:149017400-149050600	Weak transcription	Thymus	Thymus
4	chr2:149017400-149062800	Weak transcription	Fetal Lung	lung
5	chr2:149017400-149070600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:149017600-149043400	Weak transcription	Fetal Stomach	stomach
7	chr2:149017600-149049000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:149017600-149060800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:149025800-149044600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:149026000-149045000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:149026000-149070400	Weak transcription	Fetal Intestine Small	intestine
12	chr2:149029400-149055400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:149031000-149041400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:149031400-149042000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:149031400-149079000	Weak transcription	Left Ventricle	heart
16	chr2:149031600-149046200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:149031600-149055200	Weak transcription	Primary T cells from cord blood	blood
18	chr2:149036600-149047000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:149037200-149041200	Weak transcription	HepG2	liver
20	chr2:149038400-149044800	Weak transcription	Primary B cells from cord blood	blood
21	chr2:149039400-149041200	Enhancers	HUVEC	blood vessel
22	chr2:149039600-149041200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:149039600-149044600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:149039600-149045000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:149039600-149045200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:149040000-149046200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:149040400-149041600	Enhancers	Fetal Heart	heart
28	chr2:149040400-149046200	Weak transcription	NHDF-Ad	bronchial
29	chr2:149040600-149041400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr2:149040600-149041400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:149040600-149041400	Enhancers	Colon Smooth Muscle	Colon
32	chr2:149040600-149041600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr2:149040600-149046000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:149040800-149041400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr2:149040800-149042000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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