Variant report

Variant	rs13426488
Chromosome Location	chr2:58929702-58929703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10184841	0.89[AFR][1000 genomes]
rs13421824	0.86[AFR][1000 genomes]
rs13423515	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58928800-58929800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:58928800-58930200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:58928800-58931400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:58929000-58929800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:58929000-58930200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:58929000-58930200	Enhancers	HMEC	breast
7	chr2:58929000-58930200	Enhancers	HUVEC	blood vessel
8	chr2:58929000-58930600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:58929200-58929800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:58929200-58930000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:58929200-58930000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:58929200-58930200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:58929200-58930200	Enhancers	HepG2	liver
14	chr2:58929200-58930400	Enhancers	NH-A	brain
15	chr2:58929200-58931000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:58929400-58935600	Weak transcription	K562	blood
17	chr2:58929600-58930200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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