Variant report

Variant	rs13427261
Chromosome Location	chr2:77231788-77231789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10198817	0.94[AFR][1000 genomes]
rs10205538	0.94[AFR][1000 genomes]
rs10210527	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77228600-77233800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:77229200-77233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:77231000-77231800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:77231400-77232000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:77231400-77232000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:77231600-77233800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:77231600-77233800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:77231600-77234600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:77231600-77234800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:77231600-77235800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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