Variant report

Variant	rs13427307
Chromosome Location	chr2:191243210-191243211
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191184133..191186291-chr2:191242934..191245669,2	K562	blood:
2	chr2:191242745..191245683-chr2:191540842..191543473,2	K562	blood:
3	chr2:191198145..191200650-chr2:191242690..191244565,2	K562	blood:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

rs_ID	r²[population]
rs10190456	1.00[AMR][1000 genomes]
rs73048070	1.00[AMR][1000 genomes]
rs73050047	1.00[AMR][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191219600-191243800	Weak transcription	Gastric	stomach
2	chr2:191225200-191244000	Weak transcription	Fetal Heart	heart
3	chr2:191225200-191244800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:191227400-191244400	Weak transcription	A549	lung
5	chr2:191231800-191247800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:191236000-191244200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:191236200-191243400	Weak transcription	Lung	lung
8	chr2:191236200-191243400	Weak transcription	Right Ventricle	heart
9	chr2:191236200-191243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:191236200-191244200	Weak transcription	Left Ventricle	heart
11	chr2:191236200-191244600	Weak transcription	Spleen	Spleen
12	chr2:191236200-191244800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:191236400-191243600	Weak transcription	Adipose Nuclei	Adipose
14	chr2:191236400-191243600	Weak transcription	Osteobl	bone
15	chr2:191236400-191243800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:191236400-191244000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:191236400-191245400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:191237000-191243400	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:191237200-191246000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:191237400-191244400	Weak transcription	Fetal Lung	lung
21	chr2:191241800-191243400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:191242000-191244000	Weak transcription	Stomach Mucosa	stomach
23	chr2:191242800-191243400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr2:191242800-191243400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr2:191242800-191243400	Active TSS	Placenta	Placenta
26	chr2:191242800-191243600	Active TSS	Fetal Kidney	kidney
27	chr2:191242800-191243600	Active TSS	Fetal Muscle Trunk	muscle
28	chr2:191242800-191244400	Enhancers	NHDF-Ad	bronchial
29	chr2:191243000-191243400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:191243000-191243400	Active TSS	K562	blood
31	chr2:191243000-191243600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links