Variant report
| Variant | rs13428190 |
|---|---|
| Chromosome Location | chr2:184504651-184504652 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10166958 | 0.83[EUR][1000 genomes] |
| rs10167025 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10183877 | 0.84[AFR][1000 genomes] |
| rs10195759 | 0.80[AFR][1000 genomes] |
| rs11678126 | 0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12693351 | 0.80[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12693352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12693353 | 0.84[EUR][1000 genomes] |
| rs12990670 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13384849 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13388851 | 0.82[EUR][1000 genomes] |
| rs13390875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13395822 | 0.84[AFR][1000 genomes] |
| rs13422884 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13430672 | 0.83[EUR][1000 genomes] |
| rs1406337 | 0.80[EUR][1000 genomes] |
| rs34013815 | 0.84[EUR][1000 genomes] |
| rs34961489 | 0.82[EUR][1000 genomes] |
| rs35012443 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35946288 | 0.83[EUR][1000 genomes] |
| rs7570041 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012672 | chr2:184363204-184571778 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2757843 | chr2:184368473-184558908 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2759105 | chr2:184368473-184558908 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv428729 | chr2:184368473-184558908 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv583952 | chr2:184495927-184594404 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv869960 | chr2:184502527-184639318 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:184502600-184507200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr2:184503400-184508200 | Weak transcription | Fetal Heart | heart |
