Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20607895..20612833-chr2:20645228..20650823,10	MCF-7	breast:
2	chr2:20607947..20609876-chr2:20833960..20836883,2	MCF-7	breast:
3	chr2:20605399..20609856-chr2:20645106..20649834,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228950	Chromatin interaction
ENSG00000143878	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10184232	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10184455	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10193127	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10195745	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10205262	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10205683	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12618692	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13419739	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13426129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13428398	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13431644	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6724230	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6739062	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6739079	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6742002	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6742129	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6745745	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6756207	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73220034	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73220035	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7596292	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7608432	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20601400-20614800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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