Variant report

Variant	rs13431484
Chromosome Location	chr2:99393292-99393293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:99393260-99393661	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99393178..99396071-chr2:99408635..99411955,5	MCF-7	breast:
2	chr2:99347124..99349184-chr2:99391953..99393526,2	MCF-7	breast:
3	chr2:99384290..99389208-chr2:99389339..99394045,5	MCF-7	breast:
4	chr2:99391796..99394293-chr2:99395311..99397641,2	MCF-7	breast:
5	chr2:99391084..99393411-chr2:99394844..99396426,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10168498	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2001590	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6542840	0.83[AMR][1000 genomes]
rs7573796	0.82[EUR][1000 genomes]
rs7578060	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7608174	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99385800-99394000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:99385800-99410400	Weak transcription	Right Atrium	heart
3	chr2:99389000-99393800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:99391000-99395400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:99391600-99406600	Weak transcription	Thymus	Thymus
6	chr2:99392000-99393400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:99392000-99393400	Enhancers	Fetal Lung	lung
8	chr2:99392400-99393800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:99392800-99396200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:99393000-99394400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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