Variant report

Variant	rs13432175
Chromosome Location	chr2:190393714-190393715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190393193..190396914-chr2:190397401..190400008,4	MCF-7	breast:
2	chr2:190393626..190396210-chr2:190405499..190408344,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10173590	1.00[AFR][1000 genomes]
rs10188755	1.00[AFR][1000 genomes]
rs10195345	0.85[AFR][1000 genomes]
rs13419514	0.85[AFR][1000 genomes]
rs13421625	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190386600-190398200	Weak transcription	Aorta	Aorta
2	chr2:190387600-190397000	Weak transcription	Placenta	Placenta
3	chr2:190390000-190397200	Weak transcription	Fetal Intestine Large	intestine
4	chr2:190392000-190397000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:190392400-190398000	Weak transcription	Stomach Mucosa	stomach
6	chr2:190392400-190398200	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:190392400-190399600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:190392400-190406400	Weak transcription	Small Intestine	intestine
9	chr2:190392600-190397200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:190392600-190397800	Weak transcription	HepG2	liver
11	chr2:190392600-190398000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr2:190393000-190393800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:190393000-190399400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:190393000-190399800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:190393200-190393800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:190393200-190397200	Weak transcription	Ovary	ovary
17	chr2:190393200-190398000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:190393400-190393800	Enhancers	HSMMtube	muscle
19	chr2:190393400-190398200	Weak transcription	Adipose Nuclei	Adipose
20	chr2:190393600-190393800	Enhancers	Right Atrium	heart
21	chr2:190393600-190394200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:190393600-190395000	Weak transcription	A549	lung
23	chr2:190393600-190397000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:190393600-190398000	Weak transcription	HSMM	muscle
25	chr2:190393600-190398200	Weak transcription	Fetal Lung	lung

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