Variant report

Variant	rs13432345
Chromosome Location	chr2:37839202-37839203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QPCT-3	chr2:37832379-37870742	NONHSAT070127

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10182657	1.00[AFR][1000 genomes]
rs13422447	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37831400-37843200	Weak transcription	Liver	Liver
2	chr2:37832000-37841400	Weak transcription	Pancreas	Pancrea
3	chr2:37832600-37841000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:37832800-37839600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:37832800-37841200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:37837000-37840400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:37837200-37839800	Enhancers	Fetal Lung	lung
8	chr2:37837200-37841200	Weak transcription	Spleen	Spleen
9	chr2:37837600-37840200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:37837600-37842000	Enhancers	NHDF-Ad	bronchial
11	chr2:37837600-37842200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:37837800-37839400	Enhancers	Fetal Heart	heart
13	chr2:37837800-37839600	Enhancers	Colon Smooth Muscle	Colon
14	chr2:37837800-37840000	Enhancers	Adipose Nuclei	Adipose
15	chr2:37837800-37840000	Enhancers	Rectal Smooth Muscle	rectum
16	chr2:37837800-37840400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:37837800-37842600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:37838000-37840000	Enhancers	Fetal Stomach	stomach
19	chr2:37838000-37841200	Weak transcription	Right Atrium	heart
20	chr2:37838200-37839400	Enhancers	HSMMtube	muscle
21	chr2:37838200-37840000	Enhancers	Fetal Muscle Leg	muscle
22	chr2:37838400-37840200	Enhancers	Ovary	ovary
23	chr2:37838400-37842800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:37838600-37839600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr2:37838600-37841000	Weak transcription	Osteobl	bone
26	chr2:37838600-37843600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:37838800-37841000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:37838800-37841000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr2:37839000-37841000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:37839000-37841200	Weak transcription	Aorta	Aorta
31	chr2:37839000-37841600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:37839000-37842800	Weak transcription	Lung	lung
33	chr2:37839000-37843000	Weak transcription	Left Ventricle	heart
34	chr2:37839000-37843000	Weak transcription	Right Ventricle	heart
35	chr2:37839000-37843000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr2:37839200-37840800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr2:37839200-37841000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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