Variant report

Variant	rs13432404
Chromosome Location	chr2:40085290-40085291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12328526	1.00[EUR][1000 genomes]
rs55705994	1.00[EUR][1000 genomes]
rs55885648	1.00[EUR][1000 genomes]
rs56357782	1.00[EUR][1000 genomes]
rs57093708	1.00[EUR][1000 genomes]
rs59235036	1.00[EUR][1000 genomes]
rs61129196	1.00[EUR][1000 genomes]
rs6544265	0.87[EUR][1000 genomes]
rs6727511	1.00[EUR][1000 genomes]
rs72944447	1.00[EUR][1000 genomes]
rs73927417	1.00[EUR][1000 genomes]
rs73927419	1.00[EUR][1000 genomes]
rs73927420	1.00[EUR][1000 genomes]
rs73927421	1.00[EUR][1000 genomes]
rs73927435	1.00[EUR][1000 genomes]
rs73927436	1.00[EUR][1000 genomes]
rs73927438	1.00[EUR][1000 genomes]
rs73927439	1.00[EUR][1000 genomes]
rs73927441	1.00[EUR][1000 genomes]
rs73927442	1.00[EUR][1000 genomes]
rs73927443	1.00[EUR][1000 genomes]
rs73927444	1.00[EUR][1000 genomes]
rs73927445	1.00[EUR][1000 genomes]
rs73927448	1.00[EUR][1000 genomes]
rs73927449	1.00[EUR][1000 genomes]
rs7583312	1.00[EUR][1000 genomes]
rs7608457	1.00[EUR][1000 genomes]
rs7608671	1.00[EUR][1000 genomes]
rs9967698	1.00[EUR][1000 genomes]
rs9967701	1.00[EUR][1000 genomes]
rs9967778	1.00[EUR][1000 genomes]
rs9967782	1.00[EUR][1000 genomes]
rs9967853	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003593	chr2:40009597-40165666	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535651	chr2:40009597-40165666	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv873891	chr2:40046658-40173905	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916300	chr2:40079899-40339019	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv430947	chr2:40080723-40141649	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv581496	chr2:40082054-40123904	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40079400-40087600	Weak transcription	HMEC	breast
2	chr2:40083400-40086000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links