Variant report

Variant	rs13432776
Chromosome Location	chr2:209061140-209061141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209060491..209062065-chr2:209066501..209069096,2	K562	blood:
2	chr2:209059939..209061469-chr2:209069888..209071988,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10192683	0.82[EUR][1000 genomes]
rs10432522	0.86[EUR][1000 genomes]
rs10445731	0.88[EUR][1000 genomes]
rs10445799	0.84[EUR][1000 genomes]
rs10445800	0.84[EUR][1000 genomes]
rs10932247	0.93[EUR][1000 genomes]
rs10932248	0.93[EUR][1000 genomes]
rs10932249	0.91[EUR][1000 genomes]
rs10932250	0.93[EUR][1000 genomes]
rs10932251	0.93[EUR][1000 genomes]
rs12373811	0.88[EUR][1000 genomes]
rs12473347	0.88[EUR][1000 genomes]
rs13027625	0.93[EUR][1000 genomes]
rs13411179	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16840683	0.84[EUR][1000 genomes]
rs2028878	0.87[EUR][1000 genomes]
rs2197565	0.93[EUR][1000 genomes]
rs4675738	0.88[EUR][1000 genomes]
rs4675740	0.88[EUR][1000 genomes]
rs4675741	0.88[EUR][1000 genomes]
rs6435428	0.88[EUR][1000 genomes]
rs6435429	0.88[EUR][1000 genomes]
rs6435431	0.88[EUR][1000 genomes]
rs6711758	0.88[EUR][1000 genomes]
rs6714981	0.88[EUR][1000 genomes]
rs6740421	0.88[EUR][1000 genomes]
rs6743514	0.88[EUR][1000 genomes]
rs6748125	0.82[EUR][1000 genomes]
rs6755619	0.88[EUR][1000 genomes]
rs73065258	0.84[EUR][1000 genomes]
rs73065286	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7585931	0.88[EUR][1000 genomes]
rs7588978	0.88[EUR][1000 genomes]
rs9967759	0.88[EUR][1000 genomes]
rs9967760	0.88[EUR][1000 genomes]
rs9967830	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv834517	chr2:209006797-209170269	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv584299	chr2:209021232-209067051	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv875749	chr2:209022909-209062388	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv875750	chr2:209022909-209069303	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv875751	chr2:209042963-209110784	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv522180	chr2:209052303-209062388	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3353403	chr2:209060482-209062480	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2526251	chr2:209060759-209062271	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv6944	chr2:209060909-209061744	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2009585	chr2:209060980-209061671	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv4098	chr2:209061031-209061647	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3459070	chr2:209061051-209061580	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3506810	chr2:209061070-209061588	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3506809	chr2:209061071-209061588	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3506808	chr2:209061080-209061529	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3506812	chr2:209061084-209061514	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3459069	chr2:209061093-209061550	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3459068	chr2:209061100-209061549	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3332418	chr2:209061101-209061529	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3459066	chr2:209061107-209061505	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3506811	chr2:209061114-209061525	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3382703	chr2:209061121-209061499	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209040000-209064000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:209055800-209064600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:209058400-209063200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:209060000-209061800	Weak transcription	Ovary	ovary
5	chr2:209061000-209062400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:209061000-209062400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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