Variant report

Variant	rs13433236
Chromosome Location	chr20:15692291-15692292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13433242	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs16996401	0.80[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35911320	0.85[AFR][1000 genomes]
rs6043476	1.00[LWK][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15680000-15692400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15692000-15692400	Enhancers	Fetal Kidney	kidney
3	chr20:15692000-15692400	Enhancers	Stomach Mucosa	stomach
4	chr20:15692000-15692600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr20:15692200-15692600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:15692200-15693000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:15692200-15693000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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