Variant report

Variant	rs13433431
Chromosome Location	chr21:27938215-27938216
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13433470	0.90[YRI][hapmap]
rs2830275	0.82[YRI][hapmap]
rs2830280	0.90[YRI][hapmap]
rs7277524	0.96[YRI][hapmap]
rs7283190	0.90[YRI][hapmap]
rs8128689	0.96[YRI][hapmap]
rs9984233	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv587335	chr21:27715263-27955385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3368990	chr21:27938123-27938325	Weak transcription Strong transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27886200-27944200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:27912600-27942600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr21:27914600-27944200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr21:27923000-27944200	Weak transcription	Fetal Stomach	stomach
5	chr21:27923200-27944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr21:27923400-27944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr21:27929000-27944800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr21:27930200-27939000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr21:27930200-27942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr21:27931400-27943000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr21:27931400-27944400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr21:27931600-27944400	Weak transcription	Left Ventricle	heart
13	chr21:27933200-27940400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr21:27933200-27942400	Weak transcription	Right Atrium	heart
15	chr21:27933200-27945000	Weak transcription	Spleen	Spleen
16	chr21:27934000-27944400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr21:27934200-27943200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr21:27935200-27938800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr21:27935200-27944800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr21:27936000-27938800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr21:27936200-27938800	Strong transcription	Fetal Lung	lung
22	chr21:27936200-27938800	Enhancers	HUVEC	blood vessel
23	chr21:27936400-27938600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr21:27936400-27938800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr21:27936400-27938800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr21:27936400-27939200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr21:27936600-27938600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr21:27936800-27939000	Enhancers	Primary hematopoietic stem cells	blood
29	chr21:27937200-27938600	Weak transcription	Primary B cells from cord blood	blood
30	chr21:27937800-27939200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr21:27938000-27938600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr21:27938000-27939200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr21:27938000-27942200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr21:27938000-27942200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr21:27938200-27939200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr21:27938200-27942400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr21:27938200-27942400	Weak transcription	Fetal Kidney	kidney
38	chr21:27938200-27943200	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links