Variant report

Variant	rs13434367
Chromosome Location	chr3:59792449-59792450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590382	chr3:59763809-59793062	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1998826	chr3:59792193-59792640	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
10	esv3408789	chr3:59792333-59792501	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
11	esv3365552	chr3:59792353-59792471	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
12	esv1004832	chr3:59792391-59792450	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:59778200-59811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:59782400-59794800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:59787000-59795800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:59787200-59802000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:59788400-59797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:59788800-59795400	Weak transcription	Dnd41	blood
8	chr3:59789400-59795000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:59789400-59796800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:59789400-59797600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:59789400-59797600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:59789800-59794000	Weak transcription	Fetal Thymus	thymus
13	chr3:59789800-59797800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:59789800-59798000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:59791000-59793600	Strong transcription	Primary T cells from cord blood	blood
16	chr3:59791400-59797800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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