Variant report

Variant	rs13435520
Chromosome Location	chr4:99551207-99551208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10020677	0.93[JPT][hapmap]
rs28412266	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28541670	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28604404	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532753	0.80[ASN][1000 genomes]
rs6832517	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99535600-99554200	Enhancers	Brain Substantia Nigra	brain
2	chr4:99544000-99552400	Weak transcription	Thymus	Thymus
3	chr4:99546400-99554200	Enhancers	Brain Angular Gyrus	brain
4	chr4:99546600-99554000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:99546600-99560000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:99546800-99559800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:99547200-99554400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:99547800-99552400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:99547800-99552600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:99547800-99559200	Weak transcription	Stomach Mucosa	stomach
11	chr4:99548000-99551800	Weak transcription	Right Ventricle	heart
12	chr4:99548000-99552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:99548000-99552200	Weak transcription	Pancreas	Pancrea
14	chr4:99548000-99552400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:99548000-99552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:99548000-99552400	Weak transcription	Fetal Thymus	thymus
17	chr4:99548000-99552600	Weak transcription	Lung	lung
18	chr4:99548000-99560600	Weak transcription	Right Atrium	heart
19	chr4:99548000-99569200	Weak transcription	Gastric	stomach
20	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
21	chr4:99548200-99551400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:99548200-99552000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:99548400-99552200	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:99548400-99552400	Weak transcription	Fetal Stomach	stomach
25	chr4:99548400-99563600	Weak transcription	HSMM	muscle
26	chr4:99549000-99551400	Weak transcription	NHLF	lung
27	chr4:99549200-99554000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:99549400-99551400	Weak transcription	Fetal Heart	heart
29	chr4:99549400-99551600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:99549400-99551600	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:99549400-99552000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:99549400-99552400	Weak transcription	Aorta	Aorta
33	chr4:99549600-99551600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:99549600-99551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:99549600-99563200	Weak transcription	HMEC	breast
36	chr4:99549800-99563600	Weak transcription	NHEK	skin
37	chr4:99550000-99551400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:99550000-99551400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:99550000-99551400	Weak transcription	Ovary	ovary
40	chr4:99550000-99551600	Weak transcription	Osteobl	bone
41	chr4:99550000-99553200	Weak transcription	NH-A	brain
42	chr4:99550000-99553800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:99550000-99563600	Weak transcription	HUVEC	blood vessel
44	chr4:99550400-99554200	Enhancers	Brain Hippocampus Middle	brain
45	chr4:99550400-99554800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:99550600-99551400	Weak transcription	Brain Anterior Caudate	brain
47	chr4:99550600-99551400	Weak transcription	NHDF-Ad	bronchial
48	chr4:99550600-99551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:99550600-99551800	Weak transcription	Brain Germinal Matrix	brain
50	chr4:99550600-99555000	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links