Variant report

Variant	rs13435629
Chromosome Location	chr4:119949556-119949557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119903981..119906939-chr4:119947642..119950040,2	MCF-7	breast:
2	chr4:119949102..119951001-chr4:120133372..120135620,2	MCF-7	breast:
3	chr4:119948393..119951325-chr4:119952925..119955236,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178636	Chromatin interaction
ENSG00000145390	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17050152	0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119941800-119961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:119946400-119949800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:119946400-119949800	Active TSS	A549	lung
4	chr4:119946600-119951000	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr4:119946800-119951000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:119946800-119957000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:119947000-119952200	Weak transcription	Brain Angular Gyrus	brain
8	chr4:119947200-119949800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:119947200-119959800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:119947400-119951000	Active TSS	HSMMtube	muscle
11	chr4:119947400-119951200	Weak transcription	Fetal Kidney	kidney
12	chr4:119947400-119955400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:119947400-119955600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:119947600-119951000	Active TSS	Rectal Smooth Muscle	rectum
15	chr4:119947600-119951200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr4:119947800-119949800	Active TSS	Psoas Muscle	Psoas
17	chr4:119947800-119951000	Active TSS	Colon Smooth Muscle	Colon
18	chr4:119947800-119954400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:119948000-119949800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:119948000-119949800	Active TSS	Fetal Intestine Large	intestine
21	chr4:119948000-119951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:119948000-119951200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr4:119948000-119951200	Weak transcription	Spleen	Spleen
24	chr4:119948200-119949800	Active TSS	Fetal Muscle Trunk	muscle
25	chr4:119948200-119951000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:119948200-119951000	Active TSS	Stomach Smooth Muscle	stomach
27	chr4:119948200-119951000	Active TSS	HSMM	muscle
28	chr4:119948200-119951400	Weak transcription	Lung	lung
29	chr4:119948200-119955000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:119948200-119955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:119948200-119955400	Weak transcription	HMEC	breast
32	chr4:119948200-119961000	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:119948200-119961800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:119948200-119961800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:119948400-119949600	Active TSS	Adipose Nuclei	Adipose
36	chr4:119948400-119949600	Active TSS	Right Atrium	heart
37	chr4:119948400-119949800	Active TSS	Ovary	ovary
38	chr4:119948400-119950400	Active TSS	Fetal Muscle Leg	muscle
39	chr4:119948400-119950800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:119948400-119951000	Weak transcription	Gastric	stomach
41	chr4:119948600-119949800	Active TSS	Fetal Stomach	stomach
42	chr4:119948600-119949800	Active TSS	Right Ventricle	heart
43	chr4:119948600-119950200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:119948600-119950600	Active TSS	NHLF	lung
45	chr4:119948600-119951000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:119948600-119951000	Weak transcription	Fetal Heart	heart
47	chr4:119948600-119951000	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr4:119948600-119951000	Active TSS	NHDF-Ad	bronchial
49	chr4:119948600-119951200	Weak transcription	Left Ventricle	heart
50	chr4:119948600-119955200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links