Variant report

Variant	rs13435901
Chromosome Location	chr4:151119076-151119077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12374344	0.94[ASN][1000 genomes]
rs28405622	0.88[ASN][1000 genomes]
rs28468660	0.86[ASN][1000 genomes]
rs4696597	0.88[ASN][1000 genomes]
rs62346572	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13435901	LRBA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151097600-151129000	Weak transcription	Lung	lung
2	chr4:151098200-151120000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:151098200-151128000	Weak transcription	Fetal Stomach	stomach
4	chr4:151100000-151127800	Weak transcription	Osteobl	bone
5	chr4:151101600-151127600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:151103200-151138000	Weak transcription	NH-A	brain
7	chr4:151104200-151127400	Weak transcription	Fetal Brain Female	brain
8	chr4:151108600-151130000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:151108800-151120200	Weak transcription	A549	lung
10	chr4:151108800-151129000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:151109000-151126400	Weak transcription	Fetal Lung	lung
12	chr4:151112600-151128200	Weak transcription	Left Ventricle	heart
13	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
14	chr4:151115400-151127200	Weak transcription	HSMMtube	muscle
15	chr4:151116000-151119400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:151116200-151119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:151117400-151120400	Weak transcription	HSMM	muscle
18	chr4:151117800-151119200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:151117800-151128200	Weak transcription	Ovary	ovary
20	chr4:151118000-151127200	Weak transcription	Brain Anterior Caudate	brain
21	chr4:151118200-151127000	Weak transcription	Brain Germinal Matrix	brain
22	chr4:151118400-151119200	Enhancers	NHDF-Ad	bronchial
23	chr4:151118400-151128200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:151119000-151119400	Enhancers	NHLF	lung
25	chr4:151119000-151119800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:151119000-151119800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:151119000-151122200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:151119000-151122800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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