Variant report

Variant	rs13436147
Chromosome Location	chr5:36883618-36883619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10042505	0.93[AFR][1000 genomes]
rs10044029	0.90[AFR][1000 genomes]
rs10051357	1.00[AFR][1000 genomes]
rs10057086	0.87[AFR][1000 genomes]
rs10057503	1.00[AFR][1000 genomes]
rs10069500	0.87[AFR][1000 genomes]
rs10472280	0.87[AFR][1000 genomes]
rs13176880	0.82[YRI][hapmap]
rs7704118	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36877800-36885400	Weak transcription	Spleen	Spleen
2	chr5:36878800-36885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36879000-36885600	Weak transcription	Placenta	Placenta
4	chr5:36879200-36885200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:36879200-36885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:36879200-36885200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:36879200-36885200	Weak transcription	Gastric	stomach
8	chr5:36879200-36885200	Weak transcription	Pancreas	Pancrea
9	chr5:36879200-36885400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:36879200-36885400	Weak transcription	Esophagus	oesophagus
11	chr5:36879200-36885400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:36879200-36885400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:36879200-36885600	Weak transcription	Colonic Mucosa	Colon
14	chr5:36879200-36885800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:36879200-36885800	Weak transcription	Small Intestine	intestine
16	chr5:36879200-36889400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:36879400-36885200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:36879400-36885200	Weak transcription	Fetal Thymus	thymus
19	chr5:36879400-36885400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:36879400-36885400	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:36879400-36885400	Weak transcription	Fetal Stomach	stomach
22	chr5:36879400-36885400	Weak transcription	Right Ventricle	heart
23	chr5:36879400-36885600	Weak transcription	HSMM	muscle
24	chr5:36879400-36885800	Weak transcription	Psoas Muscle	Psoas
25	chr5:36879400-36887400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:36879600-36889400	Weak transcription	HSMMtube	muscle
27	chr5:36879800-36884600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:36879800-36885000	Enhancers	Liver	Liver
29	chr5:36879800-36885200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:36879800-36885400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:36879800-36885400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:36879800-36885400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:36879800-36885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:36879800-36885400	Weak transcription	Thymus	Thymus
35	chr5:36879800-36891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:36880000-36885200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:36880000-36889000	Weak transcription	Brain Anterior Caudate	brain
38	chr5:36880000-36891200	Weak transcription	Fetal Brain Female	brain
39	chr5:36880000-36897400	Weak transcription	NHLF	lung
40	chr5:36880200-36884800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:36880200-36885600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:36880400-36897800	Weak transcription	HUVEC	blood vessel
43	chr5:36881000-36885000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:36881000-36899800	Weak transcription	Brain Substantia Nigra	brain
45	chr5:36881000-36900600	Weak transcription	Osteobl	bone
46	chr5:36881200-36885200	Weak transcription	Ovary	ovary
47	chr5:36881200-36885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:36881200-36885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:36881200-36885400	Weak transcription	Brain Angular Gyrus	brain
50	chr5:36881200-36885600	Weak transcription	Fetal Lung	lung

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