Variant report

Variant	rs13436339
Chromosome Location	chr5:99896771-99896772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:99896221-99896840	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
FAM174A	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10069524	1.00[AFR][1000 genomes]
rs10079329	1.00[AFR][1000 genomes]
rs9327117	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599165	chr5:99469004-100063039	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv948969	chr5:99534096-100133827	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv882461	chr5:99745767-99927338	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882462	chr5:99745767-100060150	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv1025890	chr5:99745775-99936186	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1017420	chr5:99745775-100133140	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv537825	chr5:99745775-100133140	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv882463	chr5:99784116-99898851	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv882464	chr5:99784116-99905367	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv882465	chr5:99784116-99927338	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1018395	chr5:99827242-100003207	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv2763473	chr5:99883352-99907664	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:99872400-99931400	Weak transcription	Aorta	Aorta
2	chr5:99872600-99922800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:99872800-99902000	Weak transcription	HSMM	muscle
4	chr5:99872800-99916200	Weak transcription	Ovary	ovary
5	chr5:99873400-99897000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:99873400-99916200	Weak transcription	Fetal Stomach	stomach
7	chr5:99873400-99930600	Weak transcription	NH-A	brain
8	chr5:99874000-99897800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:99878400-99930600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:99879600-99897600	Weak transcription	Primary B cells from cord blood	blood
11	chr5:99880600-99897800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:99882200-99899200	Weak transcription	Left Ventricle	heart
13	chr5:99884000-99910400	Weak transcription	HUVEC	blood vessel
14	chr5:99886600-99897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:99886800-99897800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:99886800-99899400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:99886800-99930200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:99887000-99897800	Weak transcription	Fetal Lung	lung
19	chr5:99887200-99897800	Weak transcription	GM12878-XiMat	blood
20	chr5:99887200-99912000	Weak transcription	Psoas Muscle	Psoas
21	chr5:99887200-99916200	Weak transcription	Lung	lung
22	chr5:99887200-99924600	Weak transcription	Fetal Thymus	thymus
23	chr5:99887600-99899600	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:99887600-99907200	Weak transcription	Pancreas	Pancrea
25	chr5:99887800-99898200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:99889600-99898800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:99889800-99898200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:99889800-99898600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:99893400-99897800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:99893800-99910400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:99894400-99897600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr5:99894400-99907400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:99894800-99897800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr5:99894800-99899400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:99895000-99899000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr5:99895400-99898400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:99895400-99902000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:99895400-99919800	Weak transcription	HSMMtube	muscle
39	chr5:99895600-99903000	Weak transcription	Placenta	Placenta
40	chr5:99895800-99911600	Weak transcription	NHDF-Ad	bronchial
41	chr5:99895800-99921000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr5:99895800-99931000	Weak transcription	Fetal Intestine Large	intestine
43	chr5:99896000-99897800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:99896200-99897800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr5:99896200-99898000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:99896200-99898600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr5:99896200-99916200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr5:99896200-99927600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:99896400-99896800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:99896400-99897000	Enhancers	HUES48 Cell Line	embryonic stem cell

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