Variant report

Variant	rs13436856
Chromosome Location	chr5:147346090-147346091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4493662	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60395301	0.89[ASN][1000 genomes]
rs6883640	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147336400-147352800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:147336600-147352600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:147343000-147346400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:147343200-147347800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:147343800-147346400	Weak transcription	Esophagus	oesophagus
6	chr5:147343800-147352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:147344000-147350800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:147344200-147346600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:147344200-147347800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:147344400-147351800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:147344400-147363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:147344600-147347000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:147345200-147346800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:147345200-147347200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:147345200-147352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:147345400-147352800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:147345600-147353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:147345800-147346600	Enhancers	Hela-S3	cervix
19	chr5:147346000-147346200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:147346000-147346200	Enhancers	Stomach Mucosa	stomach

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