Variant report

Variant	rs13437135
Chromosome Location	chr6:109804172-109804173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109804146-109804605	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:109804146-109804534	HUVEC	blood vessel:	n/a	n/a
3	HCFC1	chr6:109803955-109804550	K562	blood:	n/a	n/a
4	TCF12	chr6:109804124-109804560	A549	lung:	n/a	n/a
5	CEBPD	chr6:109804162-109804527	HepG2	liver:	n/a	n/a
6	MYC	chr6:109803793-109804676	A549	lung:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804470-109804480 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
7	POLR2A	chr6:109803563-109804594	GM19099	blood:	n/a	n/a
8	POLR2A	chr6:109803944-109805084	K562	blood:	n/a	n/a
9	CHD1	chr6:109803863-109804345	GM12878	blood:	n/a	n/a
10	RUNX3	chr6:109804153-109804532	GM12878	blood:	n/a	n/a
11	CEBPB	chr6:109803632-109804219	H1-hESC	embryonic stem cell:	n/a	chr6:109803942-109803953
12	POLR2A	chr6:109804160-109804488	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr6:109804092-109804511	GM12878	blood:	n/a	n/a
14	CEBPB	chr6:109803666-109804180	MCF-7	breast:	n/a	chr6:109803942-109803953
15	SIN3AK20	chr6:109803857-109804547	PANC-1	pancreas:	n/a	n/a
16	YY1	chr6:109804003-109804626	GM12892	blood:	n/a	chr6:109804399-109804408 chr6:109804399-109804410 chr6:109804325-109804339 chr6:109804119-109804128 chr6:109804133-109804144 chr6:109804400-109804414
17	CEBPB	chr6:109803647-109804548	HepG2	liver:	n/a	chr6:109803942-109803953
18	ELF1	chr6:109804029-109804689	HCT-116	colon:	n/a	chr6:109804399-109804408 chr6:109804427-109804438 chr6:109804428-109804437 chr6:109804427-109804438 chr6:109804429-109804438 chr6:109804355-109804367 chr6:109804401-109804413
19	POLR2A	chr6:109804102-109805063	K562	blood:	n/a	n/a
20	MAX	chr6:109803714-109804746	A549	lung:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804470-109804480 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
21	POLR2A	chr6:109804116-109804527	SK-N-MC	brain:	n/a	n/a
22	CREB1	chr6:109804091-109804719	HepG2	liver:	n/a	n/a
23	CTCF	chr6:109804120-109804270	GM12875	blood:	n/a	chr6:109804141-109804150
24	MAX	chr6:109803788-109805016	NB4	blood:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804470-109804480 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
25	POLR2A	chr6:109803635-109805111	Raji	blood:	n/a	n/a
26	ETS1	chr6:109804158-109804537	K562	blood:	n/a	chr6:109804430-109804440 chr6:109804178-109804191 chr6:109804228-109804239 chr6:109804399-109804410 chr6:109804159-109804172 chr6:109804429-109804440
27	JUN	chr6:109803654-109804690	K562	blood:	n/a	chr6:109804353-109804362
28	E2F4	chr6:109803828-109804600	MCF10A-Er-Src	breast:	n/a	chr6:109804344-109804353 chr6:109804450-109804465 chr6:109804352-109804361 chr6:109804400-109804410 chr6:109804195-109804205 chr6:109804119-109804128
29	MXI1	chr6:109803921-109804988	HepG2	liver:	n/a	chr6:109804471-109804480 chr6:109804473-109804482 chr6:109804473-109804482
30	MAX	chr6:109803794-109804686	ECC-1	luminal epithelium:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804470-109804480 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
31	POLR2A	chr6:109803820-109804550	PFSK-1	brain:	n/a	n/a
32	E2F6	chr6:109804041-109804529	K562	blood:	n/a	chr6:109804344-109804353 chr6:109804450-109804465 chr6:109804352-109804361 chr6:109804400-109804410 chr6:109804195-109804205 chr6:109804119-109804128
33	YY1	chr6:109804068-109804683	HepG2	liver:	n/a	chr6:109804399-109804408 chr6:109804399-109804410 chr6:109804325-109804339 chr6:109804119-109804128 chr6:109804133-109804144 chr6:109804400-109804414
34	PML	chr6:109803677-109804595	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:109803997-109804528	K562	blood:	n/a	n/a
36	POLR2A	chr6:109803705-109804526	GM12878	blood:	n/a	n/a
37	MAX	chr6:109803824-109804727	SK-N-SH	brain:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804470-109804480 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
38	HEY1	chr6:109803897-109804540	K562	blood:	n/a	chr6:109804395-109804410 chr6:109804398-109804413 chr6:109804120-109804135 chr6:109804366-109804381 chr6:109804346-109804361
39	POLR2A	chr6:109804099-109804537	GM12892	blood:	n/a	n/a
40	POLR2A	chr6:109804157-109804520	GM12891	blood:	n/a	n/a
41	MYC	chr6:109804160-109804180	HepG2	liver:	n/a	n/a
42	CEBPB	chr6:109803635-109804193	IMR90	lung:	n/a	chr6:109803942-109803953
43	POLR2A	chr6:109803682-109804578	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr6:109804101-109804530	ECC-1	luminal epithelium:	n/a	n/a
45	POLR2A	chr6:109804092-109804571	Hela-S3	cervix:	n/a	n/a
46	ZBTB7A	chr6:109803876-109804528	ECC-1	luminal epithelium:	n/a	chr6:109804164-109804173
47	POLR2A	chr6:109803828-109804600	GM18951	blood:	n/a	n/a
48	POLR2A	chr6:109804118-109804524	SK-N-SH	brain:	n/a	n/a
49	MAZ	chr6:109803806-109805003	Hela-S3	cervix:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483
50	POLR2A	chr6:109803761-109805076	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109775795..109777582-chr6:109802976..109804493,2	MCF-7	breast:
2	chr6:109760146..109763576-chr6:109804047..109805770,3	MCF-7	breast:
3	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
4	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
5	chr6:109703226..109705290-chr6:109802868..109805423,2	K562	blood:
6	chr6:109787055..109789260-chr6:109802525..109804653,2	K562	blood:
7	chr6:109759628..109764398-chr6:109803414..109806709,4	K562	blood:
8	chr6:109802318..109804692-chr6:109827428..109829307,3	MCF-7	breast:
9	chr6:109760182..109762059-chr6:109802883..109805670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223537	TF binding region
ENSG00000155085	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135596	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377564	chr6:109803284-109806132	Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
2	esv3324958	chr6:109803709-109805707	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109801400-109804400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
2	chr6:109801600-109804200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:109803000-109804200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr6:109803000-109805000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:109803200-109804400	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr6:109803200-109804400	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr6:109803200-109804800	Active TSS	HSMMtube	muscle
11	chr6:109803200-109805000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:109803200-109805000	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:109803200-109805000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:109803200-109805000	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr6:109803200-109805000	Active TSS	Aorta	Aorta
16	chr6:109803200-109805000	Active TSS	Fetal Kidney	kidney
17	chr6:109803200-109805200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:109803200-109805400	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:109803400-109805000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:109803400-109805000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr6:109803400-109805000	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:109803400-109805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:109803400-109805000	Active TSS	A549	lung
24	chr6:109803400-109805000	Active TSS	Hela-S3	cervix
25	chr6:109803400-109805000	Active TSS	K562	blood
26	chr6:109803400-109805000	Active TSS	NH-A	brain
27	chr6:109803400-109805000	Active TSS	NHDF-Ad	bronchial
28	chr6:109803400-109805200	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:109803400-109805200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:109803400-109805200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:109803400-109805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:109803400-109805200	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr6:109803400-109805200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:109803400-109805200	Active TSS	Rectal Smooth Muscle	rectum
35	chr6:109803400-109805200	Active TSS	Osteobl	bone
36	chr6:109803400-109805400	Active TSS	H9 Cell Line	embryonic stem cell
37	chr6:109803400-109805400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:109803400-109805400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:109803400-109805400	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr6:109803400-109805400	Active TSS	GM12878-XiMat	blood
41	chr6:109803400-109805400	Active TSS	NHEK	skin
42	chr6:109803400-109805400	Active TSS	NHLF	lung
43	chr6:109803600-109804200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr6:109803600-109804200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:109803600-109804200	Active TSS	Fetal Heart	heart
46	chr6:109803600-109804800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:109803600-109804800	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr6:109803600-109805000	Active TSS	H1 Cell Line	embryonic stem cell
49	chr6:109803600-109805000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:109803600-109805000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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