Variant report

Variant	rs13438461
Chromosome Location	chr7:98735013-98735014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98730089..98736251-chr7:98737057..98742639,7	MCF-7	breast:
2	chr7:98727310..98730186-chr7:98733337..98736321,3	MCF-7	breast:
3	chr7:98728384..98730331-chr7:98733811..98736717,2	MCF-7	breast:
4	chr7:98721212..98723989-chr7:98732516..98736189,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10271953	0.83[YRI][hapmap]
rs10441294	0.82[ASW][hapmap]
rs11975084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978771	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979825	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627537	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
2	chr7:98710000-98739200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:98714800-98739400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:98718200-98736400	Weak transcription	Dnd41	blood
5	chr7:98721800-98735400	Enhancers	Stomach Mucosa	stomach
6	chr7:98722000-98739600	Weak transcription	Primary B cells from cord blood	blood
7	chr7:98722200-98738600	Weak transcription	Fetal Intestine Small	intestine
8	chr7:98722400-98739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:98723400-98735800	Weak transcription	Hela-S3	cervix
10	chr7:98723600-98738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:98723800-98738600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:98725000-98739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:98730800-98738000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:98730800-98739400	Weak transcription	Right Ventricle	heart
15	chr7:98730800-98739600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:98731000-98735200	Enhancers	A549	lung
17	chr7:98731000-98739600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:98731400-98738600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:98731800-98738400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:98731800-98739400	Weak transcription	Fetal Intestine Large	intestine
21	chr7:98732000-98736200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:98732200-98736400	Weak transcription	Primary T cells from cord blood	blood
23	chr7:98732200-98738200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:98732200-98738400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:98732200-98739400	Weak transcription	K562	blood
26	chr7:98732200-98739600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:98732400-98735200	Weak transcription	HepG2	liver
28	chr7:98732800-98738400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:98733600-98735200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr7:98733600-98735200	Enhancers	Lung	lung
31	chr7:98733600-98735400	Enhancers	Right Atrium	heart
32	chr7:98733800-98735200	Enhancers	GM12878-XiMat	blood
33	chr7:98733800-98738600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:98733800-98738600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:98733800-98739400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:98734000-98735200	Weak transcription	Liver	Liver
37	chr7:98734000-98735600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr7:98734000-98736800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:98734200-98735400	Enhancers	Pancreas	Pancrea
40	chr7:98734200-98735800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr7:98734200-98737400	Enhancers	Adipose Nuclei	Adipose
42	chr7:98734200-98738400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:98734400-98735200	Enhancers	Small Intestine	intestine
44	chr7:98734400-98735400	Enhancers	Gastric	stomach
45	chr7:98734400-98735400	Enhancers	Left Ventricle	heart
46	chr7:98734400-98735400	Enhancers	Psoas Muscle	Psoas
47	chr7:98734400-98735600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:98734400-98736000	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr7:98734400-98737200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr7:98734400-98738800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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