Variant report

Variant rs13438620
Chromosome Location chr7:27163381-27163382
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr7:27152800-27169400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr7:27155200-27163600 Weak transcription NHDF-Ad bronchial
4 chr7:27155600-27169400 Weak transcription Hela-S3 cervix
5 chr7:27156200-27169200 Weak transcription Osteobl bone
6 chr7:27159400-27163400 Weak transcription Spleen Spleen
7 chr7:27160200-27163800 Flanking Active TSS HUVEC blood vessel
8 chr7:27160400-27164400 Transcr. at gene 5' and 3' Fetal Stomach stomach
9 chr7:27161000-27164200 Flanking Active TSS HMEC breast
10 chr7:27161000-27165200 Weak transcription Psoas Muscle Psoas
11 chr7:27161200-27164000 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr7:27161200-27165400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr7:27161200-27165600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr7:27161200-27166600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr7:27161400-27163400 Active TSS A549 lung
16 chr7:27161400-27164000 Active TSS Fetal Kidney kidney
17 chr7:27161400-27164600 Active TSS Duodenum Smooth Muscle Duodenum
18 chr7:27161600-27163600 Flanking Bivalent TSS/Enh Fetal Lung lung
19 chr7:27161600-27164000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
20 chr7:27161600-27164200 Active TSS Esophagus oesophagus
21 chr7:27161600-27164400 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr7:27161600-27164600 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
23 chr7:27161600-27166200 Genic enhancers Fetal Muscle Leg muscle
24 chr7:27161800-27164000 Weak transcription Small Intestine intestine
25 chr7:27161800-27164400 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
26 chr7:27161800-27164600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr7:27161800-27164800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
28 chr7:27162000-27163400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
29 chr7:27162000-27163600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
30 chr7:27162000-27163800 Flanking Active TSS NHLF lung
31 chr7:27162000-27164200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr7:27162200-27164200 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
33 chr7:27162200-27164200 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
34 chr7:27162200-27169000 Weak transcription NHEK skin
35 chr7:27162400-27163400 Weak transcription Colon Smooth Muscle Colon
36 chr7:27162400-27163400 Active TSS Rectal Mucosa Donor 29 rectum
37 chr7:27162400-27163800 Weak transcription Pancreas Pancrea
38 chr7:27162400-27164200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr7:27162400-27165200 Weak transcription Right Atrium heart
40 chr7:27162400-27165800 Weak transcription Primary hematopoietic stem cells blood
41 chr7:27162600-27169000 Weak transcription Muscle Satellite Cultured Cells --
42 chr7:27162600-27169000 Weak transcription Aorta Aorta
43 chr7:27162800-27163400 Genic enhancers Adipose Nuclei Adipose
44 chr7:27162800-27163600 Flanking Active TSS Duodenum Mucosa Duodenum
45 chr7:27162800-27163600 Bivalent Enhancer Placenta Amnion Placenta Amnion
46 chr7:27162800-27163800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
47 chr7:27162800-27164400 Enhancers Sigmoid Colon Sigmoid Colon
48 chr7:27162800-27169600 Flanking Active TSS Stomach Smooth Muscle stomach
49 chr7:27163000-27163400 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin02 Skin
50 chr7:27163000-27163600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin

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