Variant report

Variant	rs13438724
Chromosome Location	chr7:10796478-10796479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:10795591..10798221-chr7:10854575..10857146,3	K562	blood:
2	chr7:10795829..10798121-chr7:10807049..10811087,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10224975	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10228238	0.92[ASN][1000 genomes]
rs10232354	0.88[AFR][1000 genomes]
rs10249655	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10249916	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10259924	0.84[ASN][1000 genomes]
rs10950320	0.81[JPT][hapmap]
rs11974904	0.86[AFR][1000 genomes]
rs11978329	0.89[ASN][1000 genomes]
rs11983424	0.88[ASN][1000 genomes]
rs1544411	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16876692	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163488	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17163642	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17163678	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1971642	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040796	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189535	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2189536	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4469352	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469353	0.90[ASN][1000 genomes]
rs4720897	0.87[AFR][1000 genomes]
rs55706508	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58338658	0.86[ASN][1000 genomes]
rs61127559	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62454228	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62454229	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62454235	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6460750	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67759012	0.91[ASN][1000 genomes]
rs6960801	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968151	0.82[CHB][hapmap]
rs6972998	0.88[ASN][1000 genomes]
rs6973621	0.80[AFR][1000 genomes]
rs7777546	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8180724	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9690342	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9690372	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9690896	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887596	chr7:10493399-10852392	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025328	chr7:10518861-10810504	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	esv2764009	chr7:10792150-10808021	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv519923	chr7:10795065-10798492	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10779800-10798200	Weak transcription	K562	blood
2	chr7:10796400-10797200	Enhancers	Brain Inferior Temporal Lobe	brain

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