Variant report

Variant	rs1344458
Chromosome Location	chr2:59487230-59487231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11125778	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13017760	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17643867	0.83[EUR][1000 genomes]
rs34447805	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6713914	0.87[ASN][1000 genomes]
rs7586283	0.81[ASN][1000 genomes]
rs7592918	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59484000-59493600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:59485600-59487800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:59485800-59487400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:59485800-59487800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:59487000-59487600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:59487200-59487400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:59487200-59487600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:59487200-59488000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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