Variant report

Variant	rs13447460
Chromosome Location	chr1:91967454-91967455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91869685..91873685-chr1:91965673..91969192,5	K562	blood:
2	chr1:91966732..91969554-chr1:91971493..91974418,3	MCF-7	breast:
3	chr1:91872424..91872979-chr1:91967027..91967531,2	MCF-7	breast:
4	chr1:91867702..91872217-chr1:91965179..91968319,5	K562	blood:
5	chr1:91966796..91967788-chr7:100026599..100027304,2	Hela-S3	cervix:
6	chr1:91870066..91871690-chr1:91965545..91967764,2	MCF-7	breast:
7	chr1:91879633..91881170-chr1:91966893..91969122,2	K562	blood:

Variant related genes	Relation type
ENSG00000162669	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1046622	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447510	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963912	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91965600-91967600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:91965600-91967600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr1:91965600-91968000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:91965800-91967600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:91965800-91967600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr1:91965800-91967600	Active TSS	Fetal Brain Male	brain
7	chr1:91965800-91967600	Active TSS	Fetal Muscle Trunk	muscle
8	chr1:91965800-91967800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr1:91965800-91967800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr1:91965800-91967800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:91965800-91967800	Active TSS	HSMM	muscle
12	chr1:91965800-91968200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:91965800-91968400	Active TSS	Fetal Brain Female	brain
14	chr1:91966000-91967600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:91966000-91967600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr1:91966000-91967600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:91966000-91967600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr1:91966000-91967600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:91966000-91967600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:91966000-91967600	Active TSS	Fetal Heart	heart
21	chr1:91966000-91967600	Active TSS	HepG2	liver
22	chr1:91966000-91967600	Active TSS	HSMMtube	muscle
23	chr1:91966000-91967800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:91966000-91967800	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr1:91966000-91967800	Active TSS	Fetal Intestine Small	intestine
26	chr1:91966000-91968000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:91966000-91968000	Active TSS	Aorta	Aorta
28	chr1:91966000-91968000	Active TSS	Brain Cingulate Gyrus	brain
29	chr1:91966000-91968200	Active TSS	Brain Germinal Matrix	brain
30	chr1:91966000-91968400	Active TSS	Brain Anterior Caudate	brain
31	chr1:91966200-91967600	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr1:91966200-91967600	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr1:91966200-91967600	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:91966200-91967600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:91966200-91967600	Active TSS	Muscle Satellite Cultured Cells	--
36	chr1:91966200-91967600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:91966200-91967600	Active TSS	Brain Substantia Nigra	brain
38	chr1:91966200-91967600	Active TSS	Duodenum Mucosa	Duodenum
39	chr1:91966200-91967600	Active TSS	Fetal Kidney	kidney
40	chr1:91966200-91967600	Active TSS	NHDF-Ad	bronchial
41	chr1:91966200-91967600	Active TSS	NHLF	lung
42	chr1:91966200-91967800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:91966200-91967800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:91966200-91967800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:91966200-91967800	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr1:91966200-91967800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:91966200-91967800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:91966200-91967800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr1:91966200-91967800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:91966200-91967800	Active TSS	Fetal Adrenal Gland	Adrenal Gland

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