Variant report

Variant	rs13447493
Chromosome Location	chr1:91973953-91973954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:91973807-91974007	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91966732..91969554-chr1:91971493..91974418,3	MCF-7	breast:

Variant related genes	Relation type
CDC7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13447492	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs282002	1.00[CHD][hapmap]
rs282009	1.00[CHD][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967200-91980800	Weak transcription	Gastric	stomach
2	chr1:91967200-91989000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:91967400-91977600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:91967400-91978200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:91967400-91984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:91967400-91989000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:91967600-91980400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:91967600-91990600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:91967800-91976000	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:91967800-91979200	Weak transcription	Primary B cells from cord blood	blood
11	chr1:91967800-91982400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:91967800-91983000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
14	chr1:91968000-91974600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:91968000-91982800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:91968000-91983000	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:91968000-91984400	Weak transcription	Fetal Intestine Large	intestine
18	chr1:91968000-91991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:91968200-91987400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:91968400-91979800	Weak transcription	HSMM	muscle
21	chr1:91968400-91984800	Weak transcription	NH-A	brain
22	chr1:91968400-91992000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:91968600-91974200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:91968600-91974200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:91968600-91974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:91968600-91974400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr1:91968600-91974600	Weak transcription	Fetal Brain Female	brain
28	chr1:91968600-91974600	Weak transcription	HMEC	breast
29	chr1:91968600-91976200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:91968600-91977600	Weak transcription	Fetal Kidney	kidney
31	chr1:91968600-91978600	Weak transcription	NHEK	skin
32	chr1:91968600-91979200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:91968600-91979800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:91968600-91980800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:91968600-91982600	Weak transcription	HepG2	liver
36	chr1:91968600-91984600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:91968600-91986400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:91968600-91989000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:91968600-91991000	Weak transcription	Fetal Stomach	stomach
40	chr1:91968800-91974400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:91968800-91974400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:91968800-91975000	Weak transcription	Osteobl	bone
43	chr1:91968800-91976800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:91968800-91978400	Weak transcription	Fetal Lung	lung
45	chr1:91968800-91978600	Weak transcription	A549	lung
46	chr1:91968800-91980200	Weak transcription	Brain Anterior Caudate	brain
47	chr1:91968800-91982200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:91968800-91989000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:91968800-91991200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:91969000-91974600	Weak transcription	Brain Germinal Matrix	brain

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