Variant report

Variant	rs13447562
Chromosome Location	chr1:91991771-91991772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91965752..91967867-chr1:91990688..91992690,2	K562	blood:
2	chr1:91978959..91981332-chr1:91989401..91992669,3	K562	blood:
3	chr1:91990049..91992908-chr1:91998911..92000736,2	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs988203	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
2	chr1:91968400-91992000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:91972400-91992400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:91974400-91992000	Weak transcription	HUVEC	blood vessel
5	chr1:91975000-91995200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:91977600-91992600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:91977800-91995200	Weak transcription	HMEC	breast
8	chr1:91978800-91993400	Weak transcription	Osteobl	bone
9	chr1:91980200-91992000	Weak transcription	Fetal Kidney	kidney
10	chr1:91980600-91992400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:91980600-91995800	Weak transcription	HSMM	muscle
12	chr1:91981000-91995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:91983000-92002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:91983200-91995400	Weak transcription	Hela-S3	cervix
15	chr1:91983200-91995400	Weak transcription	NHEK	skin
16	chr1:91983400-91995000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:91983400-91995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:91984400-91992200	Weak transcription	Fetal Thymus	thymus
19	chr1:91984400-91994000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:91984400-91998000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:91984600-91994400	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:91984600-91995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:91984600-91997800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:91985000-92000400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr1:91987200-91993400	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:91988600-91993200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:91989200-91997800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:91989400-91997200	Weak transcription	GM12878-XiMat	blood
29	chr1:91989400-92002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:91989800-91995400	Weak transcription	A549	lung
31	chr1:91990000-91999400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:91990800-91992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:91990800-91992400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr1:91990800-91993600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:91990800-91995400	Enhancers	NHDF-Ad	bronchial
36	chr1:91990800-91998000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:91990800-91998000	Weak transcription	Fetal Heart	heart
38	chr1:91990800-92000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:91991000-91992600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:91991000-91994600	Enhancers	Fetal Stomach	stomach
41	chr1:91991000-91995200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:91991000-91996400	Weak transcription	Dnd41	blood
43	chr1:91991200-91994800	Weak transcription	K562	blood
44	chr1:91991200-91997800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:91991400-91992200	Enhancers	Fetal Lung	lung
46	chr1:91991400-91994800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:91991600-91992200	Enhancers	Brain Germinal Matrix	brain
48	chr1:91991600-91992600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:91991600-91993800	Enhancers	NHLF	lung
50	chr1:91991600-91996000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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