Variant report

Variant	rs13447566
Chromosome Location	chr1:91992311-91992312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91965752..91967867-chr1:91990688..91992690,2	K562	blood:
2	chr1:91978959..91981332-chr1:91989401..91992669,3	K562	blood:
3	chr1:91990049..91992908-chr1:91998911..92000736,2	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11164931	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13447478	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13447489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13447494	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13447519	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6664424	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
2	chr1:91972400-91992400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:91975000-91995200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:91977600-91992600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:91977800-91995200	Weak transcription	HMEC	breast
6	chr1:91978800-91993400	Weak transcription	Osteobl	bone
7	chr1:91980600-91992400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:91980600-91995800	Weak transcription	HSMM	muscle
9	chr1:91981000-91995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:91983000-92002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:91983200-91995400	Weak transcription	Hela-S3	cervix
12	chr1:91983200-91995400	Weak transcription	NHEK	skin
13	chr1:91983400-91995000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:91983400-91995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:91984400-91994000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:91984400-91998000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:91984600-91994400	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:91984600-91995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:91984600-91997800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:91985000-92000400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:91987200-91993400	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:91988600-91993200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:91989200-91997800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:91989400-91997200	Weak transcription	GM12878-XiMat	blood
25	chr1:91989400-92002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:91989800-91995400	Weak transcription	A549	lung
27	chr1:91990000-91999400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:91990800-91992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr1:91990800-91992400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr1:91990800-91993600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:91990800-91995400	Enhancers	NHDF-Ad	bronchial
32	chr1:91990800-91998000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:91990800-91998000	Weak transcription	Fetal Heart	heart
34	chr1:91990800-92000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:91991000-91992600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr1:91991000-91994600	Enhancers	Fetal Stomach	stomach
37	chr1:91991000-91995200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:91991000-91996400	Weak transcription	Dnd41	blood
39	chr1:91991200-91994800	Weak transcription	K562	blood
40	chr1:91991200-91997800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:91991400-91994800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:91991600-91992600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:91991600-91993800	Enhancers	NHLF	lung
44	chr1:91991600-91996000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:91992000-91992600	Enhancers	Fetal Kidney	kidney
46	chr1:91992200-91992600	Flanking Active TSS	Fetal Lung	lung
47	chr1:91992200-91993600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links