Variant report

Variant	rs13447577
Chromosome Location	chr11:94227986-94227987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:94227882-94228158	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr11:94225680-94228468	SK-N-SH	brain:	n/a	chr11:94226554-94226563
3	BRCA1	chr11:94226214-94228062	Hela-S3	cervix:	n/a	chr11:94227016-94227025
4	POLR2A	chr11:94226413-94228015	IMR90	lung:	n/a	n/a
5	MYC	chr11:94227923-94228123	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr11:94226428-94228927	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:
2	chr11:94225979..94229384-chr11:94230397..94235421,9	K562	blood:
3	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
4	chr11:94180184..94182302-chr11:94227182..94229296,2	K562	blood:
5	chr11:94226137..94228706-chr11:94300541..94302920,2	K562	blood:
6	chr11:93860234..93863458-chr11:94225545..94228425,3	K562	blood:
7	chr11:93914625..93916953-chr11:94227203..94228744,2	MCF-7	breast:

Variant related genes	Relation type
MRE11A	TF binding region
ANKRD49	TF binding region
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction
ENSG00000110218	Chromatin interaction
ENSG00000168876	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13447622	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13447706	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1797582	chr11:94182992-94227993	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv1800372	chr11:94182992-94227993	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv1794580	chr11:94224060-94227993	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	esv1796910	chr11:94224060-94227993	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94225400-94228200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr11:94225600-94228000	Active TSS	GM12878-XiMat	blood
3	chr11:94225600-94228000	Active TSS	K562	blood
4	chr11:94225600-94228200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:94225600-94228200	Active TSS	A549	lung
6	chr11:94225600-94228600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:94225800-94228000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:94225800-94228000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:94225800-94228000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:94225800-94228000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:94225800-94228000	Active TSS	Hela-S3	cervix
12	chr11:94225800-94228200	Active TSS	Right Atrium	heart
13	chr11:94225800-94228400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr11:94226000-94228000	Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:94226000-94228000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:94226000-94228000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:94226000-94228000	Active TSS	Fetal Thymus	thymus
18	chr11:94226000-94228000	Active TSS	Stomach Mucosa	stomach
19	chr11:94226000-94228200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:94226000-94228200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr11:94226000-94228200	Active TSS	NHLF	lung
22	chr11:94226000-94228400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:94226000-94228400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:94226200-94228000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:94226200-94228000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:94226200-94228000	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:94226200-94228000	Active TSS	Primary T cells fromperipheralblood	blood
28	chr11:94226200-94228000	Active TSS	Fetal Intestine Small	intestine
29	chr11:94226200-94228000	Active TSS	Fetal Kidney	kidney
30	chr11:94226200-94228000	Active TSS	Psoas Muscle	Psoas
31	chr11:94226200-94228000	Active TSS	HSMM	muscle
32	chr11:94226200-94228000	Active TSS	NHDF-Ad	bronchial
33	chr11:94226200-94228000	Active TSS	NHEK	skin
34	chr11:94226200-94228200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:94226200-94228200	Active TSS	HMEC	breast
36	chr11:94226400-94228000	Active TSS	Stomach Smooth Muscle	stomach
37	chr11:94226600-94228000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:94226600-94228000	Active TSS	Brain Anterior Caudate	brain
39	chr11:94226600-94228000	Active TSS	Fetal Muscle Leg	muscle
40	chr11:94226600-94228000	Active TSS	HSMMtube	muscle
41	chr11:94227200-94228000	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr11:94227400-94228000	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr11:94227400-94228000	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr11:94227400-94228000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:94227400-94228000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr11:94227400-94228000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr11:94227400-94228000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:94227400-94228000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:94227400-94228000	Flanking Active TSS	Liver	Liver
50	chr11:94227400-94228000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links