Variant report

Variant	rs13447716
Chromosome Location	chr11:94169911-94169912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94169718..94171277-chr11:94176565..94179417,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13447673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13447698	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13447707	1.00[AMR][1000 genomes]
rs13447724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13447725	1.00[AMR][1000 genomes]
rs13447728	1.00[AMR][1000 genomes]
rs13447731	1.00[AMR][1000 genomes]
rs13447736	1.00[AMR][1000 genomes]
rs13447742	1.00[AMR][1000 genomes]
rs13447754	1.00[AMR][1000 genomes]
rs13447755	1.00[AMR][1000 genomes]
rs13447758	1.00[AMR][1000 genomes]
rs13447764	1.00[AMR][1000 genomes]
rs1805362	1.00[AMR][1000 genomes]
rs71477697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94151200-94170800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr11:94151400-94178200	Weak transcription	HUVEC	blood vessel
3	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:94153200-94177200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:94154400-94183600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:94155000-94170200	Strong transcription	Primary T cells from cord blood	blood
7	chr11:94155000-94175000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:94156600-94175000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:94157400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:94157600-94178200	Weak transcription	Colonic Mucosa	Colon
13	chr11:94157600-94182200	Weak transcription	Osteobl	bone
14	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
15	chr11:94157800-94182200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:94161000-94183000	Strong transcription	Dnd41	blood
17	chr11:94161200-94172200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:94161400-94170400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:94162000-94170000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:94162800-94170000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:94162800-94176400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:94163000-94170800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:94163000-94171600	Weak transcription	Fetal Heart	heart
26	chr11:94163000-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:94163000-94186000	Weak transcription	Fetal Brain Male	brain
28	chr11:94163000-94192800	Weak transcription	HSMMtube	muscle
29	chr11:94163000-94199200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:94163200-94177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:94163200-94179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
35	chr11:94164400-94170000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:94164400-94170000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr11:94164400-94170200	Strong transcription	Primary B cells from cord blood	blood
38	chr11:94164800-94170000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr11:94164800-94170200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:94165400-94170000	Strong transcription	Left Ventricle	heart
41	chr11:94165600-94170600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:94165800-94170000	Strong transcription	Liver	Liver
43	chr11:94166000-94170400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:94166200-94170000	Strong transcription	Adipose Nuclei	Adipose
45	chr11:94166200-94170000	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:94166200-94170000	Strong transcription	Fetal Thymus	thymus
47	chr11:94166200-94170200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:94166200-94170200	Strong transcription	GM12878-XiMat	blood
49	chr11:94166200-94170600	Strong transcription	Brain Germinal Matrix	brain
50	chr11:94166200-94171000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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