Variant report

Variant	rs1344777
Chromosome Location	chr12:105862226-105862227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105861881..105863943-chr12:106421999..106424753,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10861431	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880845	0.81[EUR][1000 genomes]
rs1918146	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177938	0.92[ASN][1000 genomes]
rs4964378	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105854200-105863000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:105857200-105862800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:105857600-105862600	Weak transcription	HSMM	muscle
4	chr12:105857600-105863000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:105858200-105864000	Weak transcription	Fetal Brain Male	brain
6	chr12:105859400-105862800	Enhancers	HUVEC	blood vessel
7	chr12:105859600-105864000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr12:105860400-105862400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:105860600-105862400	Enhancers	Fetal Heart	heart
10	chr12:105860600-105863000	Weak transcription	NH-A	brain
11	chr12:105860600-105866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:105860800-105862800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:105860800-105863000	Enhancers	Adipose Nuclei	Adipose
14	chr12:105860800-105863800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:105861000-105862800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr12:105861200-105862400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:105861400-105863000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr12:105861400-105863200	Enhancers	Right Atrium	heart
19	chr12:105861400-105863600	Enhancers	Fetal Muscle Leg	muscle
20	chr12:105861400-105863600	Enhancers	Placenta	Placenta
21	chr12:105861400-105863800	Enhancers	Left Ventricle	heart
22	chr12:105861400-105864400	Enhancers	HSMMtube	muscle
23	chr12:105861800-105863000	Weak transcription	Aorta	Aorta
24	chr12:105862000-105864000	Weak transcription	Fetal Kidney	kidney
25	chr12:105862200-105862400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr12:105862200-105863000	Weak transcription	Right Ventricle	heart
27	chr12:105862200-105863600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr12:105862200-105863600	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links