Variant report

Variant	rs1348976
Chromosome Location	chr3:160597791-160597792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1045448	0.82[CEU][hapmap]
rs11711152	0.81[JPT][hapmap]
rs11713093	0.85[JPT][hapmap]
rs11718966	0.82[JPT][hapmap]
rs11922296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12107243	0.82[CEU][hapmap]
rs12488621	0.87[CEU][hapmap]
rs12494133	1.00[CEU][hapmap]
rs13071999	0.81[JPT][hapmap]
rs13073059	0.82[JPT][hapmap]
rs13079241	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13325518	1.00[CEU][hapmap]
rs1374789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1374795	0.95[JPT][hapmap]
rs1447610	0.81[JPT][hapmap]
rs1447615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1447622	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs16831868	0.81[CEU][hapmap]
rs1839018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868107	0.81[JPT][hapmap]
rs1868109	0.90[JPT][hapmap]
rs2279106	0.87[CEU][hapmap]
rs4679917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679918	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4679920	0.86[JPT][hapmap]
rs6441338	0.82[JPT][hapmap]
rs6763838	0.87[CEU][hapmap]
rs6768115	0.81[JPT][hapmap]
rs6774725	0.81[JPT][hapmap]
rs6791327	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6799779	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7429731	0.87[CEU][hapmap]
rs7641892	0.82[JPT][hapmap]
rs7649954	0.87[CEU][hapmap]
rs898683	0.87[CEU][hapmap]
rs898684	0.87[CEU][hapmap]
rs898685	0.82[CEU][hapmap]
rs935497	0.81[JPT][hapmap]
rs956447	0.90[JPT][hapmap]
rs9812507	0.81[JPT][hapmap]
rs9844267	0.81[JPT][hapmap]
rs9857195	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9857482	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160595600-160600000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160595600-160602000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:160596400-160603800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:160597400-160597800	Enhancers	Psoas Muscle	Psoas
5	chr3:160597400-160598000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:160597600-160597800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:160597600-160598000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:160597600-160598400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:160597600-160598800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links