Variant report

Variant	rs1349425
Chromosome Location	chr15:42322599-42322600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12909234	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs12917178	0.83[EUR][1000 genomes]
rs1623753	0.92[CEU][hapmap]
rs1628549	0.80[CEU][hapmap]
rs1668565	0.84[CEU][hapmap]
rs1704375	0.92[CEU][hapmap]
rs2665204	0.85[EUR][1000 genomes]
rs2665206	0.85[EUR][1000 genomes]
rs2724936	0.83[EUR][1000 genomes]
rs2724938	0.85[EUR][1000 genomes]
rs2724943	0.85[EUR][1000 genomes]
rs4924604	0.87[EUR][1000 genomes]
rs7163284	0.92[CEU][hapmap]
rs7496299	0.82[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv569235	chr15:42304628-42326259	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42320000-42324000	Weak transcription	Psoas Muscle	Psoas
2	chr15:42320400-42327200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:42320600-42323600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:42322000-42324000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:42322000-42324200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:42322000-42324200	Enhancers	NHEK	skin
7	chr15:42322000-42327200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:42322200-42324200	Enhancers	HMEC	breast
9	chr15:42322400-42322600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:42322400-42322600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:42322400-42322800	Enhancers	Esophagus	oesophagus
12	chr15:42322400-42324200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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