Variant report

Variant	rs1350791
Chromosome Location	chr3:98296446-98296447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1675505	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1675512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16846266	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1729984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4857097	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6793347	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528056	chr3:98101101-98317836	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv520503	chr3:98102801-98317836	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv834775	chr3:98170059-98367552	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv997484	chr3:98284283-98371420	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1000357	chr3:98284283-98381473	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv536661	chr3:98286588-98315764	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1350791	FILIP1L	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98283800-98298400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:98285000-98303400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:98286800-98304200	Weak transcription	Pancreas	Pancrea
4	chr3:98287200-98310200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:98287400-98310400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:98288200-98303400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:98290400-98307600	Weak transcription	Psoas Muscle	Psoas
8	chr3:98292400-98297000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:98292400-98299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:98292400-98301600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:98292400-98307400	Weak transcription	Fetal Kidney	kidney
12	chr3:98292400-98307600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:98292400-98310400	Weak transcription	Small Intestine	intestine
14	chr3:98292400-98311000	Weak transcription	Fetal Brain Male	brain
15	chr3:98292600-98303000	Weak transcription	A549	lung
16	chr3:98292600-98310200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:98292800-98297400	Weak transcription	HUVEC	blood vessel
18	chr3:98292800-98303600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:98293000-98303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:98293000-98311800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr3:98293200-98299400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:98293200-98310400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:98294000-98297800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:98294400-98310400	Weak transcription	Colonic Mucosa	Colon
25	chr3:98294400-98311000	Weak transcription	Stomach Mucosa	stomach
26	chr3:98294600-98303400	Weak transcription	Fetal Intestine Small	intestine
27	chr3:98294600-98304400	Weak transcription	Right Ventricle	heart
28	chr3:98294600-98308200	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:98294800-98299200	Weak transcription	Fetal Brain Female	brain
30	chr3:98294800-98299200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:98294800-98302800	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:98294800-98308200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:98294800-98311000	Weak transcription	Esophagus	oesophagus
34	chr3:98295000-98296600	Genic enhancers	Liver	Liver
35	chr3:98295000-98296600	ZNF genes & repeats	GM12878-XiMat	blood
36	chr3:98295000-98297200	Strong transcription	K562	blood
37	chr3:98295000-98298800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr3:98295000-98305800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:98295000-98308000	Weak transcription	Brain Germinal Matrix	brain
40	chr3:98295200-98297000	Strong transcription	Brain Hippocampus Middle	brain
41	chr3:98295200-98297200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr3:98295200-98297800	Strong transcription	Brain Anterior Caudate	brain
43	chr3:98295200-98298000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:98295200-98298200	Strong transcription	Primary T cells from cord blood	blood
45	chr3:98295200-98299400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:98295200-98300600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:98295200-98300600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:98295200-98300800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:98295200-98300800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr3:98295200-98301200	Strong transcription	Fetal Intestine Large	intestine

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